Department of Computer Science and Engineering
The Pennsylvania State University
Office: 346D IST Building
Phone: +1(814) 404-0830
E-mail: jijeong@cse (dot) psu (dot) edu


Jieun Jeong is a Ph.D candidate in the Department of Computer Science and Engineering, Pennsylvania State University. Jieun Jeong received her B.A. in Computer Science from the University of Texas at Austin.


Publications

Journal Articles

* Low cost search in scale-free networks [pdf] [preprint]
Jieun Jeong and Piotr Berman
Physical Review E ,75:036104 (2007)

* Consistent sets of secondary structures in proteins [pdf] [preprint]
Piotr Berman and Jieun Jeong
Algorithmica, To appear (published online first, 10 November 2007)

* On cycles in the transcription network of Saccharomyces cerevisiae
Jieun Jeong and Piotr Berman


* Fold classification based on secondary structure -- how much is gained by including loop topology? [pdf]
Jieun Jeong, Piotr Berman, Teresa Przytycka.
BMC Structural Biology, 6:3 (2006)

Refereed Conference Proceedings

* Packing to angles and sectors [pdf]
Piotr Berman, Jieun Jeong, Shiva Kasiviswanathan, Bhuvan Urgaonkar.
Proceedings of ACM Symposium on Parallel Algorithms and Architectures (SPAA), 171-180 (2007)
(A preliminary version appeared as ECCC technical report. ECCC TR06-030)

* Bringing folding pathways into strand pairing prediction [pdf]
Jieun Jeong, Piotr Berman, Teresa Przytycka.
The Workshop on Algorithms in Bioinformatics (WABI), 38-48 (2007)

Research Interests

* Application of computer science and mathematics to the problems in biology.
* Computational Systems Biology, Protein Structure Prediction, Algorithm Design, and Probabilistic Analysis.


Papers in review

* On cycles in the transcription network of Saccharomyces cerevisiae
Jieun Jeong and Piotr Berman


Talks/ Poster presentations

* Cycles in the transcription network of S. cerevisiae [abstract]
Jieun Jeong and Piotr Berman
Poster at RECOMB Regulatory Genomics 2007, MIT/Broad, Oct 11-13, 2007.

* Consistent sets of secondary structures in proteins [abstract][slides in pdf][manuscript in pdf]
Piotr Berman and Jieun Jeong
DIMACS Workshop on Information Processing by Protein Structure in Molecular Recognition, Rutgers University, June 13-14, 2005.
Poster at RECOMB 2006, Venice Lido, April 2-5, 2006.

* Predicting protein structure from its approximation
Jieun Jeong, Piotr Berman and Teresa Pryzycka
CCGB Seminar, Penn State University, June 29, 2005.

Teaching Experience:

* Spring 2006 - Teaching Assitant for Jonathan Goldtine's undergrauate course: "Data Structures and Algorithms"
* Fall 2005 - Teaching Assistant for Martin Furer's graduate course: "Algorithm Design and Analysis"
* Fall 2005 - Teaching Assistant for Martin Furer's undergraduate course: "Theory of Automata, Language and Computability"
* Spring 2005 - Teaching Assistant for Piotr Berman's graduate course: "Theory of Graphs and Networks"

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