tag:blogger.com,1999:blog-59258927427430946422011-04-21T13:38:54.528-07:00Jieun Jeonghttp://www.blogger.com/profile/06561462856414932624noreply@blogger.comBlogger11100tag:blogger.com,1999:blog-5925892742743094642.post-1204596516774490262008-01-10T11:02:00.000-08:002008-01-10T11:05:20.647-08:00Department of Computer Science and Engineering<br />The Pennsylvania State University<br />Office: 346D IST Building<br />Phone: +1(814) 404-0830<br />E-mail: jijeong@cse (dot) psu (dot) edu<br /><br /><br />Jieun Jeong is a Ph.D candidate in the Department of Computer Science and Engineering, Pennsylvania State University. Jieun Jeong received her B.A. in Computer Science from the University of Texas at Austin.<br /><br /><br />Publications<br /><br /> Journal Articles<br /><br /> * Low cost search in scale-free networks [pdf] [preprint]<br /> Jieun Jeong and Piotr Berman<br /> Physical Review E ,75:036104 (2007)<br /><br /> * Consistent sets of secondary structures in proteins [pdf] [preprint]<br /> Piotr Berman and Jieun Jeong<br /> Algorithmica, To appear (published online first, 10 November 2007)<br /><br /> * On cycles in the transcription network of Saccharomyces cerevisiae<br /> Jieun Jeong and Piotr Berman<br /><br /><br /> * Fold classification based on secondary structure -- how much is gained by including loop topology? [pdf]<br /> Jieun Jeong, Piotr Berman, Teresa Przytycka.<br /> BMC Structural Biology, 6:3 (2006)<br /><br /> Refereed Conference Proceedings<br /><br /> * Packing to angles and sectors [pdf]<br /> Piotr Berman, Jieun Jeong, Shiva Kasiviswanathan, Bhuvan Urgaonkar.<br /> Proceedings of ACM Symposium on Parallel Algorithms and Architectures (SPAA), 171-180 (2007)<br /> (A preliminary version appeared as ECCC technical report. ECCC TR06-030)<br /><br /> * Bringing folding pathways into strand pairing prediction [pdf]<br /> Jieun Jeong, Piotr Berman, Teresa Przytycka.<br /> The Workshop on Algorithms in Bioinformatics (WABI), 38-48 (2007)<br /><br />Research Interests<br /><br /> * Application of computer science and mathematics to the problems in biology.<br /> * Computational Systems Biology, Protein Structure Prediction, Algorithm Design, and Probabilistic Analysis.<br /><br /><br /> Papers in review<br /><br /> * On cycles in the transcription network of Saccharomyces cerevisiae<br /> Jieun Jeong and Piotr Berman<br /><br /><br />Talks/ Poster presentations<br /><br /> * Cycles in the transcription network of S. cerevisiae [abstract]<br /> Jieun Jeong and Piotr Berman<br /> Poster at RECOMB Regulatory Genomics 2007, MIT/Broad, Oct 11-13, 2007.<br /><br /> * Consistent sets of secondary structures in proteins [abstract][slides in pdf][manuscript in pdf]<br /> Piotr Berman and Jieun Jeong<br /> DIMACS Workshop on Information Processing by Protein Structure in Molecular Recognition, Rutgers University, June 13-14, 2005.<br /> Poster at RECOMB 2006, Venice Lido, April 2-5, 2006.<br /><br /> * Predicting protein structure from its approximation<br /> Jieun Jeong, Piotr Berman and Teresa Pryzycka<br /> CCGB Seminar, Penn State University, June 29, 2005.<br /><br />Teaching Experience:<br /><br /> * Spring 2006 - Teaching Assitant for Jonathan Goldtine's undergrauate course: "Data Structures and Algorithms"<br /> * Fall 2005 - Teaching Assistant for Martin Furer's graduate course: "Algorithm Design and Analysis"<br /> * Fall 2005 - Teaching Assistant for Martin Furer's undergraduate course: "Theory of Automata, Language and Computability"<br /> * Spring 2005 - Teaching Assistant for Piotr Berman's graduate course: "Theory of Graphs and Networks"<br /><br /><a href="http://claimid.com/jieunj">Jieun Jeong at claimid.com</a><br><br /><br><br /><a href="http://www.linkedin.com/in/jieunjeong">Jieun Jeong at<br />linkedin.com</a><br><br /><br><br /><a href="http://www.ziggs.com/apps/profile/bio.aspx?uid=34504">Jieun<br />Jeong at ziggs.com</a><br><br /><br><br /><a href="http://jieunjeong.vox.com/profile/">Jieun Jeong at ikarma.com</a><br><br /><a href="http://www.squidoo.com/jieunjeong"><br><br />Jieun Jeong at squidoo.com</a><br><div class="blogger-post-footer"><img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/5925892742743094642-120459651677449026?l=jieunjeong.blogspot.com' alt='' /></div>Jieun Jeonghttp://www.blogger.com/profile/06561462856414932624noreply@blogger.com0